Structural bioinformatics : Methods and protocols Edited by Zoltan Gaspari

By:

Gaspari, Zoltan

Contributor(s):

Walker, John M. [series Edtr.]

Material type: Text

TextSeries: Methods in molecular biology, 2112. ; Springer protocols (Series)Publication details: New York, NY : Humana Press, c 2020.Edition: 1Description: i-xii+256PISBN:

9781071602690

Subject(s):

Structural bioinformatics -- Laboratory manuals. Bioinformatics

DDC classification:

570.285 GAS-S

Contents:

Visualization and Analysis of Protein Structures with LiteMol Suite -- Comparative Protein Structure Analysis with Bio3D-Web -- Using DALI for Protein Structure Comparison -- Assessing Protein Function through Structural Similarities with CATH -- Protein Thermal Stability Engineering using HoTMuSiC -- Contact Area-Based Structural Analysis of Proteins and their Complexes using CAD-Score -- A Comprehensive Computational Platform to Guide Drug Development using Graph-Based Signature Methods -- Systematic Exploration of Binding Modes of Ligands on Drug Targets -- Using MemBlob to Analyze Transmembrane Regions Based on Cryo-EM Maps -- Structural Characterization of Protein-Protein Interactions with pyDockSAXS -- Protein-Protein Modeling using Cryo-EM Restraints -- Modeling of Multimolecular Complexes -- Biological Assembly Comparison with VAST+ -- BioMagResBank (BMRB) as a Resource for Structural Biology -- Integrating Molecular Simulation and Experimental Data: A Bayesian/Maximum Entropy Reweighting Approach -- Evaluation and Selection of Dynamic Protein Structural Ensembles with CoNSEnsX+.

Summary: This volume looks at the latest techniques used to perform comparative structure analyses, and predict and evaluate protein-ligand interactions. The chapters in this book cover tools and servers such as LiteMol; Bio3D-Web; DALI; CATH; HoTMuSiC, a contact-base protein structure analysis tool known as CAD-Score; PyDockSaxs and HADDOCK; CombDock and DockStar; the BioMagResBank database; as well as BME and CoNSEnsX+. Written in the highly successful Methods in Molecular Biology series format, chapters include introductions to their respective topics, step-by-step, readily reproducible computational protocols, and tips on troubleshooting and avoiding known pitfalls. Cutting-edge and comprehensive, Structural Bioinformatics: Methods and Protocols is a practical guide for researchers to learn more about the aforementioned tools to further enhance their studies in the growing field of structural bioinformatics. Chapter 13 is open access under a CC-BY 4.0 license via link.springer.com

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Holdings
Item type	Current library	Home library	Call number	Status	Date due	Barcode
Book	Dept. of Computational Biology and Bioinformatics Processing Center	Dept. of Computational Biology and Bioinformatics	570.285 GAS-S (Browse shelf(Opens below))	Checked out to ARYA V. V. (23011001003)	31/03/2022	DCB3962

Visualization and Analysis of Protein Structures with LiteMol Suite --
Comparative Protein Structure Analysis with Bio3D-Web --
Using DALI for Protein Structure Comparison --
Assessing Protein Function through Structural Similarities with CATH --
Protein Thermal Stability Engineering using HoTMuSiC --
Contact Area-Based Structural Analysis of Proteins and their Complexes using CAD-Score --
A Comprehensive Computational Platform to Guide Drug Development using Graph-Based Signature Methods --
Systematic Exploration of Binding Modes of Ligands on Drug Targets --
Using MemBlob to Analyze Transmembrane Regions Based on Cryo-EM Maps --
Structural Characterization of Protein-Protein Interactions with pyDockSAXS --
Protein-Protein Modeling using Cryo-EM Restraints --
Modeling of Multimolecular Complexes --
Biological Assembly Comparison with VAST+ --
BioMagResBank (BMRB) as a Resource for Structural Biology --
Integrating Molecular Simulation and Experimental Data: A Bayesian/Maximum Entropy Reweighting Approach --
Evaluation and Selection of Dynamic Protein Structural Ensembles with CoNSEnsX+.

This volume looks at the latest techniques used to perform comparative structure analyses, and predict and evaluate protein-ligand interactions. The chapters in this book cover tools and servers such as LiteMol; Bio3D-Web; DALI; CATH; HoTMuSiC, a contact-base protein structure analysis tool known as CAD-Score; PyDockSaxs and HADDOCK; CombDock and DockStar; the BioMagResBank database; as well as BME and CoNSEnsX+. Written in the highly successful Methods in Molecular Biology series format, chapters include introductions to their respective topics, step-by-step, readily reproducible computational protocols, and tips on troubleshooting and avoiding known pitfalls. Cutting-edge and comprehensive, Structural Bioinformatics: Methods and Protocols is a practical guide for researchers to learn more about the aforementioned tools to further enhance their studies in the growing field of structural bioinformatics. Chapter 13 is open access under a CC-BY 4.0 license via link.springer.com

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