Marine genomics : methods and protocols /
edited by Sarah J. Bourlat, Department of Marine Sciences, University of Gothenburg, Gothenburg, Sweden.
- New York: Humana Press; 2016.
- x, 253 pages : illustrations (some color) ;
- Methods in molecular biology, Springer protocols .
"This Humana Press imprint is published by Springer Nature"--Title page verso.
Includes bibliographical references and index.
1. Sampling of riverine or marine bacterial communities in remote locations : from field to publication / Katja Lehmann -- 2. DNA extraction protocols for whole-genome sequencing in marine organisms / Marina Panova, Henrik Aronsson, R. Andrew Cameron, Peter Dahl, Anna Godhe, Ulrika Lind, Olga Ortega-Martinez, Ricardo Pereyra, Sylvie V.M. Tesson, Anna-Lisa Wrange, Anders Blomberg, and Kerstin Johannesson -- 3. High-throughput sequencing of complete mitochondrial genomes / Andrew George Briscoe, Kevin Peter Hopkins, and Andrea Waeschenbach -- 4. Phylogenomics using transcriptome data / Johanna Taylor Cannon and Kevin Michael Kocot -- 5. SNP discovery using next generation transcriptomic sequencing / Pierre De Wit -- 6. SNP arrays for species identification in salmonids / Roman Wenne, Agata Drywa, Matthew Kent, Kristil Kindem Sundsaasen, and Sigbjřrn Lien -- 7. The next-generation PCR-based quantification method for ambient waters : digital PCR / Yiping Cao, John F. Griffith, and Stephen B. Weisberg -- 8. Using environmental DNA for invasive species surveillance and monitoring / Andrew R. Mahon and Christopher L. Jerde -- 9. Microarrays/DNA chips for the detection of waterborne pathogens / Filipa F. Vale -- 10. DNA barcoding of marine metazoans / Dirk Steinke, Sean W.J. Prosser, and Paul D.N. Hebert -- 11. DNA barcoding marine biodiversity : steps from mere cataloguing to giving reasons for biological differences / Mikko Nikinmaa and Miriam Götting -- 12. Metabarcoding marine sediments : preparation of amplicon libraries / Vera G. Fonseca and Delphine Lallias -- 13. Preparation of amplicon libraries for metabarcoding of marine eukaryotes using Illumina MiSeq : the dual-PCR method / Sarah J. Bourlat, Quiterie Haenel, Jennie Finnman, and Matthieu Leray -- 14. Preparation of amplicon libraries for metabarcoding of marine eukaryotes using Illumina MiSeq : the adapter ligation method / Matthieu Leray, Quiterie Haenel, and Sarah J. Bourlat -- 15. Visualizing patterns of marine eukaryotic diversity from metabarcoding data using QIIME / Matthieu Leray and Nancy Knowlton -- 16. Analysis of Illumina MiSeq metabarcoding data : application to benthic indices for environmental monitoring / Eva Aylagas and Naiara Rodríguez-Ezpeleta.