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Activity-based proteomics : methods and protocols / edited by Herman S. Overkleeft and Bogdan I. Florea, Bio-Organic Synthesis Group, Leiden Institute of Chemistry, Leiden University, Leiden, The Netherlands.

By: Contributor(s): Material type: TextTextSeries: Methods in molecular biology (Clifton, N.J.) ; v. 1491. | Springer protocols (Series)Publication details: New York : Humana Press : Springer, c2017.Description: xi, 222 pages : illustrations (some color) ; 26 cmISBN:
  • 9781493964376 (hbk : alk. paper)
  • 1493964372 (hbk : alk. paper)
Subject(s): Genre/Form: DDC classification:
  • 572/.6 23 OVE-A
LOC classification:
  • QP551 .A285 2017
NLM classification:
  • W1
  • QU 25
Contents:
Activity-based protein profiling : from chemical novelty to biomedical stalwart / Sander I. van Kasteren, Bogdan I. Florea, and Herman S. Overkleeft -- Quantitative mass-spectrometry platform to monitor changes in cysteine reactivity / Yu Qian and Eranthie Weerapana -- Activity-based protein profiling with natural product-derived chemical probes in human cell lysates / Susanne Zweerink ... [et al.] -- Inhibitor discovery by convolution ABPP / Balakumaran Chandrasekar, Tram Ngoc Hong, and Renier A. L. van der Hoorn -- Activity-based protein profiling in bacteria / Joanna Krysiak and Stephan A. Sieber -- Activity-based lipid esterase profiling of M. bovis BCG at different metabolic states using tetrahydrolipstatin (THL) as bait / Madhu Sudhan Ravindran and Markus R. Wenk -- Comparative activity-based flavin-dependent oxidase profiling / Joanna Krysiak and Rolf Breinbauer -- Activity-dependent photoaffinity labeling of metalloproteases / Laurette Prely ... [et al.] -- Profiling the activity of deubiquitinating enzymes using chemically synthesized ubiquitin-based probes / Yves Leestemaker, Annemieke de Jong, and Huib Ovaa -- Biochemical and mass spectrometry-based approaches to profile SUMOylation in human cells / Benedikt M. Kessler ... [et al.] -- Live cell imaging and profiling of cysteine cathepsin activity using a quenched activity-based probes / Laura E. Edgington-Mitchell, Matthew Bogyo, and Martijn Verdoes -- Competitive ABPP of serine hydrolases : a case study on DAGL-Alpha / Marc P. Baggelaar and Mario Van der Stelt -- Protocol for protein profiling using chemoselective cleavable linker probes in semi-permeabilized cells / Jasper H. L. Claessen and Martin D. Witte -- Cleavable linkers in chemical proteomics applications / Yinliang Yang, Marko Fonović, and Steven H. L. Verhelst -- Two-step activity-based protein profiling with the proteasome system as model of study / Guillem Paniagua Soriano, Herman S. Overkleeft, and Bogdan I. Florea.
Summary: This volume focuses on explorative activity-based proteomics, biomedical applications of activity-based proteomics, and chemical strategies in activity-based proteomics providing a concise overview of activity-based protein profiling. Written in the highly successful Methods in Molecular Biology series format, chapters include introductions to their respective topics, lists of the necessary materials and reagents, step-by-step, readily reproducible laboratory protocols, and tips on troubleshooting and avoiding known pitfalls. Authoritative and cutting-edge, Activity-Based Proteomics: Methods and Protocols aims to ensure successful results in the further study of this vital field.--
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Holdings
Item type Current library Home library Call number Status Date due Barcode
Book Book IUCEIB Library, University of Kerala Processing Center IUCEIB Library, University of Kerala 572.6 OVE.A (Browse shelf(Opens below)) Available CEB646

Includes bibliographical references and index.

Activity-based protein profiling : from chemical novelty to biomedical stalwart / Sander I. van Kasteren, Bogdan I. Florea, and Herman S. Overkleeft -- Quantitative mass-spectrometry platform to monitor changes in cysteine reactivity / Yu Qian and Eranthie Weerapana -- Activity-based protein profiling with natural product-derived chemical probes in human cell lysates / Susanne Zweerink ... [et al.] -- Inhibitor discovery by convolution ABPP / Balakumaran Chandrasekar, Tram Ngoc Hong, and Renier A. L. van der Hoorn -- Activity-based protein profiling in bacteria / Joanna Krysiak and Stephan A. Sieber -- Activity-based lipid esterase profiling of M. bovis BCG at different metabolic states using tetrahydrolipstatin (THL) as bait / Madhu Sudhan Ravindran and Markus R. Wenk -- Comparative activity-based flavin-dependent oxidase profiling / Joanna Krysiak and Rolf Breinbauer -- Activity-dependent photoaffinity labeling of metalloproteases / Laurette Prely ... [et al.] -- Profiling the activity of deubiquitinating enzymes using chemically synthesized ubiquitin-based probes / Yves Leestemaker, Annemieke de Jong, and Huib Ovaa -- Biochemical and mass spectrometry-based approaches to profile SUMOylation in human cells / Benedikt M. Kessler ... [et al.] -- Live cell imaging and profiling of cysteine cathepsin activity using a quenched activity-based probes / Laura E. Edgington-Mitchell, Matthew Bogyo, and Martijn Verdoes -- Competitive ABPP of serine hydrolases : a case study on DAGL-Alpha / Marc P. Baggelaar and Mario Van der Stelt -- Protocol for protein profiling using chemoselective cleavable linker probes in semi-permeabilized cells / Jasper H. L. Claessen and Martin D. Witte -- Cleavable linkers in chemical proteomics applications / Yinliang Yang, Marko Fonović, and Steven H. L. Verhelst -- Two-step activity-based protein profiling with the proteasome system as model of study / Guillem Paniagua Soriano, Herman S. Overkleeft, and Bogdan I. Florea.

This volume focuses on explorative activity-based proteomics, biomedical applications of activity-based proteomics, and chemical strategies in activity-based proteomics providing a concise overview of activity-based protein profiling. Written in the highly successful Methods in Molecular Biology series format, chapters include introductions to their respective topics, lists of the necessary materials and reagents, step-by-step, readily reproducible laboratory protocols, and tips on troubleshooting and avoiding known pitfalls. Authoritative and cutting-edge, Activity-Based Proteomics: Methods and Protocols aims to ensure successful results in the further study of this vital field.--

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