Methods for Discovery and Characterization of DNA Sequence Motifs / Philipp Bucher -- Comparative Genome Analysis / Robert M. Waterhouse [and others] -- From Modules to Models: Advanced Analysis Methods for Large-Scale Data / Sven Bergmann -- Integrated Analysis of Gene Expression Profiling Studies: Examples in Breast Cancer / Pratyaksha Wirapati [and others] -- Computational Biology of Small Regulatory RNAs / Mihaela Zavolan, Lukasz Jaskiewicz -- UniProtKB/Swiss-Prot Manual and Automated Annotation of Complete Proteomes: The Dictyostelium discoideum Case Study / Amas Bairoch, Lydie Lane -- Analytical Bioinformatics for Proteomics / Patricia M. Palagi, Frédérique Lisacek -- Protein-Protein Interaction Networks: Assembly and Analysis / Christian von Mering -- Protein Structure Modeling and Docking at the Swiss Institute of Bioinformatics / Torsten Schwede, Manuel C. Peitsch -- Molecular Modeling of Proteins: From Simulations to Drug Design Applications / Vincente Zoete [and others] -- An Introduction to Phylogenetics and Its Molecular Aspects / Gabriel J. Bittar, Bernhard Pascal Sonderegger -- Phylogenetic Tree Building Methods / Manuel Gil, Gaston H. Gonnet -- Bioinformatics for Evolutionary Developmental Biology / Marc Robinson-Rechavi -- Spatiotemporal Modeling and Simulation in Biology / Ivo F. Sbalzarini.

Provides an insight into some of the key areas of activity in bioinformatics in Switzerland. This work covers both research work and major infrastructure efforts in genome and gene expression analysis, investigations on proteins and proteomes, evolutionary bioinformatics, and modeling of biological systems.